PQ161461
Genome And Source
Length
1,134
Type
dsDNA
GC%
39.6%
Completeness
unknown
Country
United States
Year
N/A
📋 Data Provenance
Genome Browser
No ORF position data available for this genome.
Curation Status
2
Isolates
3
Hosts
1
Proteins
✓
Sequence
Related Viruses
No related viruses found.
Reference
Petabase-scale sequence alignment catalyses viral discovery
Edgar RC, Taylor J, Lin V, et al.
Nature 2022
PMID: 35058634
DOI: 10.1038/s41586-021-04332-2
ICTV Mapping
No reviewed species-level mapping is available. Family-level ICTV references:
- Amdoparvovirus carnivoran1 (Amdoparvovirus)
- Amdoparvovirus carnivoran10 (Amdoparvovirus)
- Amdoparvovirus carnivoran2 (Amdoparvovirus)
- Amdoparvovirus carnivoran3 (Amdoparvovirus)
- Amdoparvovirus carnivoran4 (Amdoparvovirus)
Reviewed Evidence
Only manual-checked evidence records are displayed. Inferred records (without direct isolate linkage) are shown with a yellow badge.
Virulence / pathogenicity
Penaeus stylirostris
densovirus (PstDNV), also known as infectious hypodermal and
hematopoietic necrosis virus (IHHNV), belongs to the Densovirinae
subfamily and was first reported as a highly lethal disease of
juvenile shrimp in 1983 (22).
pathogenicity · medium
While some densoviruses in other mosquito spe-
cies do cause mortality, AgDNV is not pathogenic to
An.
pathogenicity · medium
Temperature
Our entire workflow time is much faster than the 1–2 hour timeframe of qPCR, which requires expensive thermocycling instruments for implementation, and was slightly faster than the 45 minutes incubation at 37°C reported for RPA detection of Penaeus s
temperature · high
Hosts
Diagnostic And Control Records
No curated diagnostic or control records are available for this virus.
Proteins
🧬
No protein annotations available
Loading additional protein data...
Related Literature (87 articles)
Crustacean Mab21 proteins drive tissue-specific antiviral immunity by activating IKKε outside the canonical nucleic-acid sensing paradigm.
Li H, Li Q, Yang H, Wang X, Lv A, Di X, Wang R, Wang S, Yin B, He J, Li C
2026
Insights on Minimizing False Positives in IHHNV Detection: Experiences from Ecuador's
Intriago P, Del Barco M, Vásquez MM, Montiel B, Villamar R
2025
CNN-Based Identification of Pathogens of Concern in Shrimp.
Aung T, Vanichviriyakit R, Chayantrakom K, Amornsamankul S, Huabsomboon P
2025
Expression of endogenous Anopheles gambiae microRNAs using an Anopheles gambiae densovirus (AgDNV) intronic expression system.
Johnson RM, Metz HC, Suzuki Y, McLean KJ, Rasgon JL
2025
Tracking the emergence of a novel genotype of Decapod hepanhamaparvovirus in shrimp using laser microdissection and next generation sequencing.
Cruz-Flores R, Dhar AK
2024
A remarkably diverse and well-organized virus community in a filter-feeding oyster.
Jiang JZ, Fang YF, Wei HY, Zhu P, Liu M, Yuan WG, Yang LL, Guo YX, Jin T, Shi M, Yao T, Lu J, Ye LT, Shi SK, Wang M, Duan M, Zhang DC
2023
Petabase-scale sequence alignment catalyses viral discovery
Edgar RC, Taylor J, Lin V, et al.
2022
Viral Capsid Change upon Encapsulation of Double-Stranded DNA into an Infectious Hypodermal and Hematopoietic Necrosis Virus-like Particle.
Weerachatyanukul W, Kiatmetha P, Raksat P, Boonkua S, Thongsum O, Jariyapong P, Chotwiwatthanakun C, Ounjai P, Metlagel Z
2022
Simultaneous Production of a Virus-Like Particle Linked to dsRNA to Enhance dsRNA Delivery for Yellow Head Virus Inhibition.
Worawittayatada J, Angsujinda K, Sinnuengnong R, Attasart P, Smith DR, Assavalapsakul W
2022
Rapid sample preparation and low-resource molecular detection of hepatopancreatic parvoviruses (HPV) by recombinase polymerase amplification lateral flow detection assay in shrimps (Fenneropenaeus merguiensis).
Pollak NM, Fais O, Kristoffersen J, Phuthaworn C, Knibb W, Macdonald J
2022
Current status of infection with infectious hypodermal and hematopoietic necrosis virus (IHHNV) in the Peruvian and Ecuadorian shrimp industry.
Aranguren Caro LF, Gomez-Sanchez MM, Piedrahita Y, Mai HN, Cruz-Flores R, Alenton RRR, Dhar AK
2022
Shrimp genome sequence contains independent clusters of ancient and current Endogenous Viral Elements (EVE) of the parvovirus IHHNV.
Taengchaiyaphum S, Wongkhaluang P, Sittikankaew K, Karoonuthaisiri N, Flegel TW, Sritunyalucksana K
2022
Complete Coding Genome Sequence of Infectious Hypodermal and Hematopoietic Necrosis Virus Isolated from
Bajaña L, Betancourt I, Bayot B
2022
Genetic Relatedness of Infectious Hypodermal and Hematopoietic Necrosis Virus Isolates, United States, 2019.
Dhar AK, Cruz-Flores R, Warg J, Killian ML, Orry A, Ramos J, Garfias M, Lyons G
2022
Mussel Mass Mortality and the Microbiome: Evidence for Shifts in the Bacterial Microbiome of a Declining Freshwater Bivalve.
Richard JC, Campbell LJ, Leis EM, Agbalog RE, Dunn CD, Waller DL, Knowles S, Putnam JG, Goldberg TL
2021
Mini Review: Virus Interference: History, Types and Occurrence in Crustaceans.
Escobedo-Bonilla CM
2021
Establishing a gold standard method for the detection of Cherax reovirus using reverse transcriptase, quantitative, polymerase chain reaction.
Jaroenram W, Hayakijkosol O, Owens L, Elliman J
2021
Taxonomic, functional and expression analysis of viral communities associated with marine sponges.
Nguyen M, Wemheuer B, Laffy PW, Webster NS, Thomas T
2021
Shrimp Parvovirus Circular DNA Fragments Arise From Both Endogenous Viral Elements and the Infecting Virus.
Taengchaiyaphum S, Buathongkam P, Sukthaworn S, Wongkhaluang P, Sritunyalucksana K, Flegel TW
2021
Co-Infection of Infectious Hypodermal and Hematopoietic Necrosis Virus (IHHNV) and White Spot Syndrome Virus (WSSV) in the Wild Crustaceans of Andaman and Nicobar Archipelago, India.
Saravanan Kandasamy; Praveenraj Jayasimhan; Kiruba-Sankar Rajendran; Devi Varsha; Biswas Utpal; Kumar Thangaraj Sathish; Sudhagar Arun; El-Matbouli Mansour; Kumar Gokhlesh
2021
GSK3β Plays a Negative Role During White Spot Syndrome Virus (WSSV) Infection by Regulating NF-κB Activity in Shrimp
Zhang S, Zhu L, Hou C, Yuan H, Yang S, Dehwah MAS, Shi L
2020
Mass mortality in freshwater mussels (Actinonaias pectorosa) in the Clinch River, USA, linked to a novel densovirus.
Richard JC, Leis E, Dunn CD, Agbalog R, Waller D, Knowles S, Putnam J, Goldberg TL
2020
Penaeus stylirostris densovirus proteins CP and NS1 interact with peritrophin of Litopenaeus vannamei.
Yang C, Liu Q, Peng M, Chen X, Zhu W, Chen X, Li Q, Zeng D, Zhao Y
2020
Molecular biology and structure of a novel penaeid shrimp densovirus elucidate convergent parvoviral host capsid evolution.
Pénzes JJ, Pham HT, Chipman P, Bhattacharya N, McKenna R, Agbandje-McKenna M, Tijssen P
2020
Detection of infectious hypodermal and hematopoietic necrosis virus and white spot syndrome virus in whiteleg shrimp (
Park SC, Choi SK, Han SH, Park S, Jeon HJ, Lee SC, Kim KY, Lee YS, Kim JH, Han JE
2020
The Penaeus stylirostris densovirus capsid interacts with Litopenaeus vannamei troponin I.
Chen X, Zeng D, Zhu W, Peng M, Yang C, Li Q, Liu Q, Yang Q, Wang H, Li M, Lin Y, Zhao Y, Chen X
2019
The aquatic animal pandemic crisis.
Feist SW, Thrush MA, Dunn P, Bateman K, Peeler EJ
2019
Diversity of single-stranded DNA containing viruses in shrimp.
Dhar AK, Cruz-Flores R, Caro LFA, Siewiora HM, Jory D
2019
The Penaeus stylirostris densovirus capsid protein interacts with the Litopenaeus vannamei BCCIP protein.
Zeng D, Peng M, Yang Q, Yang C, Liao Z, Li Q, Liu Q, Zhu W, Wang H, Li M, Chen X, Xie D, Lin Y, Chen X, Zhao Y
2019
Diversity and Evolution of Novel Invertebrate DNA Viruses Revealed by Meta-Transcriptomics.
Porter Ashleigh F; Shi Mang; Eden John-Sebastian; Zhang Yong-Zhen; Holmes Edward C
2019
Complete Genome Sequences of Four Major Viruses Infecting Marine Shrimp in Egypt.
Megahed ME, Cruz-Flores R, Dhar AK
2018
Presence of Penaeus monodon densovirus in the ovary of chronically infected P. monodon subadults.
Fernando S, Attasart P, Krishna SR, Withyachumnarnkul B, Vanichviriyakit R
2018
Metagenomic sequencing suggests a diversity of RNA interference-like responses to viruses across multicellular eukaryotes.
Waldron FM, Stone GN, Obbard DJ
2018
Administration of co-expressed Penaeus stylirostris densovirus-like particles and dsRNA-YHV-Pro provide protection against yellow head virus in shrimp.
Sinnuengnong R, Attasart P, Smith DR, Panyim S, Assavalapsakul W
2018
Densoviruses in oyster Crassostrea ariakensis.
Kang YJ, Huang W, Zhao AL, Lai DD, Shao L, Shen YQ, Deng X, Delwart E, Zhang W
2017
Mosquito cells (C6/36) fail to support the complete replication of Penaeus merguiensis hepandensovirus.
Syahidah D, Elliman J, Constantinoiu C, Owens L
2017
Selection and validation of candidate reference genes for quantitative real-time PCR studies in the shrimp Penaeus vannamei under viral infection.
Valenzuela-Castillo A, Mendoza-Cano F, Enríquez-Espinosa T, Grijalva-Chon JM, Sánchez-Paz A
2017
Recent progress toward the identification of anti-viral immune mechanisms in decapod crustaceans.
Hauton C
2017
Coral-associated viral communities show high levels of diversity and host auxiliary functions.
Weynberg KD, Laffy PW, Wood-Charlson EM, Turaev D, Rattei T, Webster NS, van Oppen MJH
2017
Prevalence, diversity and co-occurrence of the white spot syndrome virus, monodon baculovirus and Penaeus stylirostris densovirus in wild populations of Penaeus monodon in the Philippines.
Orosco Fredmoore L; Lluisma Arturo O
2017
[Construction of AalDV-3 Mediated mirRNA Sponge Delivery System and Its Effect on Cell and Larva of Aedes aegypti].
Guo J, Wang Y
2016
Comparative paleovirological analysis of crustaceans identifies multiple widespread viral groups.
Metegnier G, Becking T, Chebbi MA, Giraud I, Moumen B, Schaack S, Cordaux R, Gilbert C
2015
Development of an overlapping PCR method to clone the full genome of infectious hypodermal and hematopoietic necrosis virus (IHHNV).
Wei YW, Fan DD, Chen J
2015
First complete genome of an Ambidensovirus; Cherax quadricarinatus densovirus, from freshwater crayfish Cherax quadricarinatus.
Bochow S, Condon K, Elliman J, Owens L
2015
An improved validated SYBR green-based real-time quantitative PCR assay for the detection of the Penaeus stylirostris densovirus in penaeid shrimp.
Encinas-García T, Mendoza-Cano F, Enríquez-Espinoza T, Luken-Vega L, Vichido-Chávez R, Sánchez-Paz A
2015
Prevalence of the infectious hypodermal and hematopoietic necrosis virus in shrimp (Penaeus vannamei) broodstock in northwestern Mexico.
Mendoza-Cano F, Enríquez-Espinoza T, Encinas-García T, Sánchez-Paz A
2014
Separation of endogenous viral elements from infectious Penaeus stylirostris densovirus using recombinase polymerase amplification.
Jaroenram W, Owens L
2014
Loading additional literature...
Geographic Distribution
United States
2 isolates
Taxonomy Information
Family
Parvoviridae
Host Phylum
Arthropoda
Genome Type
dsDNA
Discovery Method
metagenomic_survey
Related Isolates
Sequence
Loading sequence...