Data Download
Only release-filtered public datasets are listed
All data is licensed under Creative Commons Attribution 4.0 International (CC BY 4.0). You are free to share and adapt the data for any purpose, provided you give appropriate credit.
Permanent archive: Zenodo DOI will be assigned upon publication.
Standardized Metadata
Filtered, publication-quality isolate metadata with source reference information. (540 KB)
View schema
Columns: accession, canonical_name, chinese_name, abbreviations, entry_type, completeness, molecule_type, sequence_length, genome_length, taxon_family, taxon_genus, taxon_species, host_name, host_cn, country, collection_year, collection_date, ref_title, pmid, doi, dataset_tier, curation_status, confidence
All Curated Sequences
FASTA sequences for strictly filtered, publication-quality isolates only. (32 MB)
View format
FASTA format: each record has a '>' header line (accession, virus name) followed by one or more nucleotide sequence lines.
Complete Genomes
Publication-quality sequences of reasonable length, annotated as complete genomes. (19 MB)
View format
FASTA format: each record has a '>' header line (accession, virus name) followed by one or more nucleotide sequence lines.
Reviewed Evidence
93,180 manually checked evidence records with PMID/DOI citations. (935 KB Excel)
View schema
Columns: evidence_id, evidence_type, claim, value_text, value_numeric_min/max, unit, context, evidence_strength, source_pmid, source_doi, extraction_method, curation_status, source_url, evidence_origin
Host-Virus Network
Publication-quality host-virus association edge table, importable by network analysis tools. (79 KB)
View schema
Columns: virus_name, host_name, host_cn, record_count