PP134842
Genome And Source
Length
309,286
Type
dsDNA
GC%
40.9%
Completeness
unknown
Country
N/A
Year
N/A
📋 Data Provenance
Genome Browser
No ORF position data available for this genome.
Curation Status
46
Isolates
2
Hosts
0
Proteins
✓
Sequence
Related Viruses
No related viruses found.
Reference
Direct Submission
Zhang,F., Dong,X. and Wang,Y.
Submitted (13-MAR-2024) Division of Maricultural Organism Disease Control and Molecular Pathology, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 106 Nanjing Road, Qingdao, Shandong 266071, China ##Assembly-Data-START## Assembly Method :: Trinity v. 2.5.1 Sequencing Technology :: Illumina ##Assembly-Data-END## 2024
ICTV Mapping
No ICTV mapping is available or reviewed for this record.
Reviewed Evidence
Only manual-checked evidence records are displayed. Inferred records (without direct isolate linkage) are shown with a yellow badge.
Virulence / pathogenicity
White spot syndrome virus (family Nimaviridae, genus Whispovirus, WSSV) is a lethal pathogen that can cause up to 100% mortality within 7–10 days on shrimp farms, and has devastated shrimp farming industries across the world (reviews by: [2–4]).
pathogenicity · high
Diagnostic And Control Records
No curated diagnostic or control records are available for this virus.
Proteins
🧬
No protein annotations available
Loading additional protein data...
Related Literature (42 articles)
AlphaFold modeling of the white spot syndrome virus polymerase.
Skern T, Oakey J
2026
A metagenomic exploration of microbial distribution among the pond sediment, shrimp (Penaeus monodon) tissue and pond water: A special focus on nutrient cycling and shrimp viral pathogens.
Sarkar A, Patra RK, Muthaiyan M, Mallik A
2025
Direct Submission
Qi,Y.
2025
Complete genome of the new bacilliform virus that causes Milky Hemolymph Syndrome in Chionoecetes bairdi (Rathbun, 1924).
Eliseikina MG, Boyko AV, Shamshurina EV, Ryazanova TV
2024
Shrimp classification for white spot syndrome detection through enhanced gated recurrent unit-based wild geese migration optimization algorithm.
Ramachandran L, Mangaiyarkarasi SP, Subramanian A, Senthilkumar S
2024
Advances on genomes studies of large DNA viruses in aquaculture: A minireview.
Ke F, Zhang QY
2023
Near-Complete Genome Sequence of White Spot Syndrome Virus Infecting Cultivated Shrimp (Penaeus vannamei) in Peru.
Salcedo-Mejía LA, Tapia-Chirinos S, Atarama-Orejuela J, Grabiel S, Villalobos E, Gómez-Sánchez M, Velazco-Peña R
2023
Nanopore MinION Sequencing Generates a White Spot Syndrome Virus Genome from a Pooled Cloacal Swab Sample of Domestic Chickens in South Africa.
Chauhan Ravendra P; Fogel Ronen; Limson Janice
2023
Autophagy and white spot syndrome virus infection in crustaceans.
Jian JT, Liu LK, Liu HP
2022
Gene delivery available in molluscan cells by strong promoter discovered from bivalve-infectious virus.
Yoon J, Gu WB, Konuma M, Kobayashi M, Yokoi H, Osada M, Nagasawa K
2022
Proteomics analysis reveals a critical role for the WSSV immediate-early protein IE1 in modulating the host prophenoloxidase system.
Wang C, Wei M, Wu G, He L, Zhu J, Juventus Aweya J, Chen X, Zhao Y, Zhang Y, Yao D
2022
Viral Shrimp Diseases Listed by the OIE: A Review
Dain Lee; Young-Bin Yu; Jae-Ho Choi; A-Hyun Jo; Sumin Hong; Ju‐Chan Kang; Jun‐Hwan Kim
2022
Establishing a gold standard method for the detection of Cherax reovirus using reverse transcriptase, quantitative, polymerase chain reaction.
Jaroenram W, Hayakijkosol O, Owens L, Elliman J
2021
White spot syndrome viral protein VP9 alters the cellular higher-order chromatin structure.
Tan X, Ravasio A, Ong HT, Wu J, Hew CL
2020
The Complete Genome of an Endogenous Nimavirus (
Bao W, Tang KFJ, Alcivar-Warren A
2020
Epitope mapping of the White Spot Syndrome Virus (WSSV) VP28 monoclonal antibody through combined in silico and in vitro analysis reveals the potential antibody binding site.
Shine PV, Shankar KM, Abhiman B, Sudheer NS, Patil R
2020
White Spot Syndrome Virus Establishes a Novel IE1/JNK/c-Jun Positive Feedback Loop to Drive Replication.
Wang S, Li H, Weng S, Li C, He J
2020
First detection of white spot syndrome virus (WSSV) in the mud shrimp Austinogebia edulis in Taiwan.
Zhu F, Twan WH, Tseng LC, Peng SH, Hwang JS
2019
Silencing of HIF-1 in WSSV-infected white shrimp: Effect on viral load and antioxidant enzymes.
Miranda-Cruz MM, Poom-Llamas JJ, Godoy-Lugo JA, Ortiz RM, Gómez-Jiménez S, Rosas-Rodríguez JA, Morán-Palacio EF, Soñanez-Organis JG
2018
Current status of viral diseases in Indian shrimp aquaculture.
Tandel GM, John KR, Rosalind George M, Prince Jeyaseelan MJ
2017
Laminin Receptor in Shrimp Is a Cellular Attachment Receptor for White Spot Syndrome Virus.
Liu WJ, Li YC, Kou GH, Lo CF
2016
Draft Genome Sequence of White Spot Syndrome Virus Isolated from Cultured Litopenaeus vannamei in Mexico.
Rodriguez-Anaya Libia Zulema; Gonzalez-Galaviz Jose Reyes; Casillas-Hernandez Ramón; Lares-Villa Fernando; Estrada Karel; Ibarra-Gamez Jose Cuauhtemoc; Sanchez-Flores Alejandro
2016
ATP synthesis is active on the cell surface of the shrimp Litopenaeus vannamei and is suppressed by WSSV infection.
Liang Y, Xu ML, Wang XW, Gao XX, Cheng JJ, Li C, Huang J
2015
Studies on the antimicrobial potential and structural characterization of fatty acids extracted from Sydney rock oyster Saccostrea glomerata.
Karthikeyan SC, Velmurugan S, Donio MB, Michaelbabu M, Citarasu T
2014
QTL for white spot syndrome virus resistance and the sex-determining locus in the Indian black tiger shrimp (Penaeus monodon).
Robinson NA, Gopikrishna G, Baranski M, Katneni VK, Shekhar MS, Shanmugakarthik J, Jothivel S, Gopal C, Ravichandran P, Gitterle T, Ponniah AG
2014
Biology, Host Range, Pathogenesis and Diagnosis of White spot syndrome virus.
Pradeep B, Rai P, Mohan SA, Shekhar MS, Karunasagar I
2012
White spot syndrome virus induces metabolic changes resembling the warburg effect in shrimp hemocytes in the early stage of infection.
Chen IT, Aoki T, Huang YT, Hirono I, Chen TC, Huang JY, Chang GD, Lo CF, Wang HC
2011
Characterization and diagnostic use of a monoclonal antibody for VP28 envelope protein of white spot syndrome virus.
Hou CL, Cao Y, Xie RH, Wang YZ, Du HH
2011
Virulence variation of white spot syndrome virus in Pacific white shrimp Litopenaeus vannamei.
Laramore SE, Scarpa J, Laramore CR, Lin J
2009
White spot syndrome virus protein ICP11: A histone-binding DNA mimic that disrupts nucleosome assembly.
Wang HC, Wang HC, Ko TP, Lee YM, Leu JH, Ho CH, Huang WP, Lo CF, Wang AH
2008
Proteomic analysis of the major envelope and nucleocapsid proteins of white spot syndrome virus.
Xie X, Xu L, Yang F
2006
RING-H2 protein WSSV249 from white spot syndrome virus sequesters a shrimp ubiquitin-conjugating enzyme, PvUbc, for viral pathogenesis.
Wang Z, Chua HK, Gusti AA, He F, Fenner B, Manopo I, Wang H, Kwang J
2005
Gene-expression profiling of White spot syndrome virus in vivo.
Marks H, Vorst O, van Houwelingen AMML, van Hulten MCW, Vlak JM
2005
Nucleocapsid protein VP15 is the basic DNA binding protein of white spot syndrome virus of shrimp.
Witteveldt J, Vermeesch AM, Langenhof M, de Lang A, Vlak JM, van Hulten MC
2005
Identification and phylogeny of a protein kinase gene of white spot syndrome virus.
Van Hulten MC, Vlak JM
2001
Three functionally diverged major structural proteins of white spot syndrome virus evolved by gene duplication.
van Hulten Mariëlle C W; Goldbach Rob W; Vlak Just M
2000
Analysis of a genomic segment of white spot syndrome virus of shrimp containing ribonucleotide reductase genes and repeat regions.
van Hulten M C; Tsai M F; Schipper C A; Lo C F; Kou G H; Vlak J M
2000
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Geographic Distribution
Japan
12 isolates
Thailand
6 isolates
United States
3 isolates
China
2 isolates
Madagascar
1 isolates
India
1 isolates
Taxonomy Information
Family
Nucleocytoviricota
Host Phylum
Arthropoda
Genome Type
dsDNA
Discovery Method
metagenomic_survey
Related Isolates
| Accession | Length | GC | Completeness | Country | Year |
|---|---|---|---|---|---|
| AF332093 | 305,119 | 41.0 | unknown | China | N/A |
| AF440570 | 307,287 | 41.0 | unknown | N/A | N/A |
| KX686117 | 300,223 | 41.0 | unknown | China | N/A |
| MN840357 | 305,094 | 41.0 | unknown | United States | N/A |
| OQ657458 | 293,023 | 41.0 | unknown | Madagascar | N/A |
| OQ858617 | 285,974 | 41.2 | unknown | United States | N/A |
| PP128489 | 288,217 | 41.1 | unknown | Japan | N/A |
| PP128490 | 279,886 | 41.1 | unknown | Japan | N/A |
| PP128491 | 288,229 | 41.1 | unknown | N/A | N/A |
| PP134839 | 309,286 | 40.9 | unknown | N/A | N/A |
| PP134840 | 309,286 | 40.9 | unknown | N/A | N/A |
| PP134841 | 309,286 | 40.9 | unknown | N/A | N/A |
| PP134842 | 309,286 | 40.9 | unknown | N/A | N/A |
| PP145080 | 305,118 | 40.4 | unknown | N/A | N/A |
| PP145081 | 305,075 | 39.3 | unknown | N/A | N/A |
| PP145082 | 305,076 | 39.2 | unknown | N/A | N/A |
| PP145083 | 305,122 | 40.5 | unknown | N/A | N/A |
| PP145084 | 305,119 | 39.5 | unknown | N/A | N/A |
| PP816934 | 300 | 46.3 | unknown | N/A | N/A |
| PQ206400 | 1,097 | 38.8 | unknown | Thailand | N/A |
| PQ206401 | 1,051 | 41.8 | unknown | Thailand | N/A |
| PQ379869 | 541 | 48.6 | unknown | India | N/A |
| PQ824250 | 281,051 | 41.0 | unknown | United States | N/A |
| PV574461 | 290,653 | 40.9 | unknown | Thailand | N/A |
| PX112034 | 289,826 | 41.1 | unknown | Thailand | N/A |
| PX206431 | 277,683 | 41.2 | unknown | Thailand | N/A |
| PX273475 | 877 | 46.4 | unknown | N/A | N/A |
| PX273476 | 866 | 46.1 | unknown | N/A | N/A |
| PX273477 | 868 | 46.5 | unknown | N/A | N/A |
| PX273478 | 878 | 46.4 | unknown | N/A | N/A |
| PX273479 | 895 | 46.6 | unknown | N/A | N/A |
| PX591678 | 288,027 | 41.0 | unknown | Japan | N/A |
| PX591679 | 288,412 | 41.1 | unknown | Japan | N/A |
| PX591680 | 284,746 | 41.0 | unknown | Japan | N/A |
| PX591681 | 288,025 | 41.0 | unknown | Japan | N/A |
| PX591682 | 288,025 | 41.0 | unknown | Japan | N/A |
| PX591683 | 288,409 | 41.1 | unknown | Japan | N/A |
| PX591684 | 288,414 | 41.1 | unknown | Japan | N/A |
| PX591685 | 288,414 | 41.1 | unknown | Japan | N/A |
| PX591686 | 288,367 | 41.1 | unknown | Japan | N/A |
| PX591687 | 288,415 | 41.1 | unknown | Japan | N/A |
| PX620399 | 296,256 | 41.0 | unknown | Thailand | N/A |
| PX667115 | 2,722 | 39.4 | unknown | N/A | N/A |
| PX667116 | 3,918 | 44.8 | unknown | N/A | N/A |
| PX667117 | 11,188 | 44.2 | unknown | N/A | N/A |
| PX667118 | 5,133 | 42.5 | unknown | N/A | N/A |
Sequence
Loading sequence...