OM638087
Genome And Source
Length
N/A
Type
ssRNA
GC%
N/A
Completeness
metadata_only
Country
N/A
Year
N/A
📋 Data Provenance
Genome Browser
No ORF position data available for this genome.
Curation Status
1
Isolates
1
Hosts
1
Proteins
—
Sequence
Related Viruses
No related viruses found.
Reference
Pathobiomic survey of the Bay Scallop (Argopecten irradians) from the Gulf Coast of Florida, USA
Scro,A.K., Bojko,J. and Behringer,D.C.
Unpublished unknown
ICTV Mapping
No reviewed species-level mapping is available. Family-level ICTV references:
- Aalivirus apekidu (Aalivirus)
- Ailurivirus agiapa (Ailurivirus)
- Ampivirus apilisi (Ampivirus)
- Anativirus aductai (Anativirus)
- Anativirus biphaco (Anativirus)
Reviewed Evidence
Only manual-checked evidence records are displayed. Inferred records (without direct isolate linkage) are shown with a yellow badge.
Virulence / pathogenicity
Poornima
123
Table 1 Discovery of viruses in humans, terrestrial and marine animals, plants and insects and understanding viral ecology using metagenomics
Objective
Finding
Reference
Discovery of viruses in human diseases
To develop a method for vir
Viruses are abundant biological entities on earth and the emergence of viral pathogens has become a serious threat to aquaculture and fisheries worldwide.
pathogenicity · medium
Quantitative real-time PCR analysis revealed the ubiquitous expression of CfIKK1
mRNA in all scallop tissues and challenge with lipopolysaccharide, peptidoglycan, or poly
(I:C) significantly upregulated the expression of CfIKK1.
pathogenicity · medium
The evolution of adaptive immune systems Nucleic acid-induced antiviral immunity in invertebrates: An evolutionary perspective Pathogen recognition and innate immunity Genetic analysis of resistance to viral infection Jak-STAT pathways and transcript
pathogenicity · medium
Proteomic analysis of muscle between hybrid abalone andparental lines Haliotis gigantea Reeve and Haliotis discus hannai Ino A proteomic study on postdiapaused embryonic development of brine shrimp (Artemia franciscana) Proteomic Comparison between T
pathogenicity · medium
Protective effect of four potential probiotics against pathogen-challenge of the larvae of three bivalves: Pacific oyster (Crassostrea gigas), flat oyster (Ostrea edulis) and scallop (Pecten maximus).
pathogenicity · medium
conicopora) are susceptible to infection by multiple abalone herpesvirus genotypes Development of a polymerase chain reaction for the detection of abalone herpesvirus infection based on the DNA polymerase gene Exploring the chronic mortality affectin
pathogenicity · medium
Protective effect of four potential probiotics against pathogen-challenge of the
larvae of three bivalves: Pacific oyster (Crassostrea gigas), flat oyster (Ostrea edulis) and scallop (Pecten maximus).
pathogenicity · medium
609
Maternal transfer of immunity in scallop Chlamys farreri and its trans-generational immune
610
protection to offspring against bacterial challenge.
pathogenicity · medium
(2008) reported an increase of PO detection in the haemocytes of scallop Chlamys
farreri after a challenge with the acute virus necrobiotic virus (AVNV).
Virus-induced genes were identified using suppression subtractive hybridisation (SSH) from Pacific cupped oyster, Crassostrea gigas, haemocytes challenged by OsHV-1.
pathogenicity · high
Temperature
In fact, phylogenetic analyses
of the 5NCR of picornavirus reveal extensive structure-con-
serving substitutions within predicted stems, a high degree of
sequence conservation in predicted loops, and clustering of
regions with sequence divergence in
temperature · medium
Proteomic analysis of muscle between hybrid abalone andparental lines Haliotis gigantea Reeve and Haliotis discus hannai Ino A proteomic study on postdiapaused embryonic development of brine shrimp (Artemia franciscana) Proteomic Comparison between T
temperature · medium
harveyi that resulted in high levels of host mortality.154 Also, Pacific oysters that
had been acclimated to high temperatures, were protected against subsequent rapid temperature stress resulted in lower mortality and vib-
rio loads than those seen i
temperature · medium
in oysters (Tiostrea chilensis), with a consideration of organelle function Replication of a herpes-like virus in larvae of the flat oyster Tiostrea chilensis at ambient temperatures Herpes-like virus infecting Pacific-oyster larvae, Creassostrea gig
In 2008 and 2009, acute mortalities occurred in France among Pacific cupped oyster, Crassostrea gigas, spat.
temperature · high
Diagnostic And Control Records
No curated diagnostic or control records are available for this virus.
Proteins
🧬
No protein annotations available
Loading additional protein data...
Related Literature (113 articles)
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Okamoto H
2026
Susceptibility of Lion's paw scallop (Nodipecten subnodosus) juveniles to a pirAB-positive Vibrio campbellii strain isolated from Litopenaeus vannamei shrimp affected by Acute Hepatopancreatic Necrosis Disease (AHPND).
Pretell Monzón K, Esquén Bayona D, Saavedra Ríos Y, Guzman Escudero F, Villano Arango J, Amasifuen Guerra CA, Escobedo Fregoso C, Kraffe E, Cueto Vega R, Diringer B
2025
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2025
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2025
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2025
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Hewson I, Brandt M, Budd K, Breitbart M, DeRito C, Gittens S, Henson MW, Hylkema A, Sevier M, Souza M, Vilanova-Cuevas B, Von Hoene S
2024
Ecological interactions between marine RNA viruses and planktonic copepods.
Hirai J, Katakura S, Kasai H, Nagai S
2024
Diseases of marine fish and shellfish in an age of rapid climate change.
Rowley AF, Baker-Austin C, Boerlage AS, Caillon C, Davies CE, Duperret L, Martin SAM, Mitta G, Pernet F, Pratoomyot J, Shields JD, Shinn AP, Songsungthong W, Srijuntongsiri G, Sritunyalucksana K, Vidal-Dupiol J, Uren Webster TM, Taengchaiyaphum S, Wongwaradechkul R, Coates CJ
2024
circRNA_8521 promotes Senecavirus A infection by sponging miRNA-324 to regulate LC3A.
Yang X, Liu R, Du Y, Mei C, Zhang G, Wang C, Yang Y, Xu Z, Li W, Liu X
2024
Metatranscriptomic data mining together with microfluidic card uncovered the potential pathogens and seasonal RNA viral ecology in a drinking water source.
Shen L, Zhang Z, Wang R, Wu S, Wang Y, Fu S
2024
Viral Diversity in Samples of Freshwater Gastropods
Butina TV, Zemskaya TI, Bondaryuk AN, Petrushin IS, Khanaev IV, Nebesnykh IA, Bukin YS
2023
Symbiotic survey of the bay scallop (Argopecten irradians) from the Gulf coast of Florida, USA.
Scro AK, Bojko J, Behringer DC
2023
Detection of novel RNA viruses in wild noble crayfish (Astacus astacus): A virome analysis in Swiss water bodies.
Zingre T, Pisano SRR, Wildi N, Dawson KLD, Cristina E, Seuberlich T, Schmidt-Posthaus H
2023
The structure and mechanism of action of a distinct class of dicistrovirus intergenic region IRESs.
Abaeva IS, Young C, Warsaba R, Khan N, Tran LV, Jan E, Pestova TV, Hellen CUT
2023
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Zhang X, Huang BW, Zheng YD, Xin LS, Chen WB, Yu T, Li C, Wang CM, Bai CM
2023
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Guo G, Wang M, Zhou D, He X, Han P, Chen G, Zeng J, Liu Z, Wu Y, Weng S, He J
2023
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Boonthaworn K, Hengphasatporn K, Shigeta Y, Chavasiri W, Rungrotmongkol T, Ounjai P
2023
Viruses of a key coral symbiont exhibit temperature-driven productivity across a reefscape.
Howe-Kerr LI, Grupstra CGB, Rabbitt KM, Conetta D, Coy SR, Klinges JG, Maher RL, McConnell KM, Meiling SS, Messyasz A, Schmeltzer ER, Seabrook S, Sims JA, Veglia AJ, Thurber AR, Thurber RLV, Correa AMS
2023
Limited cross-species virus transmission in a spatially restricted coral reef fish community.
Costa VA, Bellwood DR, Mifsud JCO, Van Brussel K, Geoghegan JL, Holmes EC, Harvey E
2023
White spot syndrome virus impact on the expression of immune genes and gut microbiome of black tiger shrimp Penaeus monodon.
Jatuyosporn T, Laohawutthichai P, Romo JPO, Gallardo-Becerra L, Lopez FS, Tassanakajon A, Ochoa-Leyva A, Krusong K
2023
A novel virus in the family Marnaviridae as a potential pathogen of Penaeus vannamei glass post-larvae disease.
Xu A, Xu S, Tu Q, Qiao H, Lin W, Li J, He Y, Xie T, Pan L, Pan Q, Zhao Y, Su X, Tong Y.
2023
Viruses of Freshwater Mussels during Mass Mortality Events in Oregon and Washington, USA.
Richard Jordan C; Blevins Emilie; Dunn Christopher D; Leis Eric M; Goldberg Tony L
2023
New Insights into the Mechanism of Action of PirAB from Vibrio Parahaemolyticus.
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2022
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2022
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2022
Gene delivery available in molluscan cells by strong promoter discovered from bivalve-infectious virus.
Yoon J, Gu WB, Konuma M, Kobayashi M, Yokoi H, Osada M, Nagasawa K
2022
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Yao S, Li L, Guan X, He Y, Jouaux A, Xu F, Guo X, Zhang G, Zhang L
2022
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Errani F, Ciulli S, Mandrioli L, Serratore P, Volpe E
2022
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2022
ADAR-Editing during Ostreid Herpesvirus 1 Infection in
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2022
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Huang B, Zhang X, Liu Q, Bai C, Li C, Wang C, Xin L
2022
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Tsuji A, Takei Y, Nishimura T, Azuma Y
2022
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Yang L; Wang ZA; Geng R; Niu S; Zuo H; Guo Z; Weng S; He J; Xu X
2022
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2021
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Adriaenssens EM, Farkas K, McDonald JE, Jones DL, Allison HE, McCarthy AJ
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2021
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Dégremont L, Morga B, Maurouard E, Travers MA
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Huang X, Li G, Liu B, Zhou C, Wang H, Qin W, Jiang Z, Wan X, Ren Q
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Human and Animal RNA Virus Diversity Detected by Metagenomics in Cameroonian Clams.
Bonny P, Schaeffer J, Besnard A, Desdouits M, Ngang JJE, Le Guyader FS
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Virus-derived sequences from the transcriptomes of two snail vectors of schistosomiasis,
Liu S, Zhang SM, Buddenborg SK, Loker ES, Bonning BC
2021
Applicability Evaluation of Male-Specific Coliphage-Based Detection Methods for Microbial Contamination Tracking.
Kim G, Park G, Kang S, Lee S, Park J, Ha J, Park K, Kang M, Cho M, Shin H
2021
Virome Analysis of Signal Crayfish (Pacifastacus leniusculus) along Its Invasion Range Reveals Diverse and Divergent RNA Viruses
Bacnik,K., Kutnjak,D., Cerni,S., Bielen,A. and Hudina,S.
2021
Loading additional literature...
Geographic Distribution
No geographic distribution data available
Taxonomy Information
Family
Picornaviridae
Host Phylum
Mollusca
Genome Type
ssRNA
Discovery Method
metagenomic_survey
Related Isolates
| Accession | Length | GC | Completeness | Country | Year |
|---|---|---|---|---|---|
| OM638087 | N/A | N/A | metadata_only | N/A | N/A |