NC_043497
Genome And Source
Length
N/A
Type
ssRNA
GC%
N/A
Completeness
metadata_only
Country
N/A
Year
N/A
📋 Data Provenance
Genome Browser
No ORF position data available for this genome.
Curation Status
22
Isolates
2
Hosts
1
Proteins
—
Sequence
Related Viruses
No related viruses found.
Reference
RT-PCR amplification and sequence analysis of extra small virus associated with white tail disease of Macrobrachium rosenbergii (de Man) cultured in Taiwan.
Wang C S; Chang J S; Shih H H; Chen S N
Journal of fish diseases 2007
PMID: 17352787
DOI: 10.1111/j.1365-2761.2007.00793.x
ICTV Mapping
Alphanodavirus boolarraense
Nodaviridae / Alphanodavirus
auto_matched · high
Reviewed Evidence
Only manual-checked evidence records are displayed. Inferred records (without direct isolate linkage) are shown with a yellow badge.
Virulence / pathogenicity
Pathogenicity terms found: lethal
pathogenicity · medium
Viral challenge and tissue collection The WSSV virions were extracted according to previously reported methods15,70, and the virions were analyzed using quantitative real-time polymerase chain reaction (qPCR)71.
pathogenicity · medium
plantarum, including live bacteria, dead bacteria, cell-free extracts, and enriched feed (Artemia immersed in bacterial solution), all have the effect on improving growth, survival rate, and FCR of shrimp.
pathogenicity · medium
Molluscan cells in culture: Primary cell cultures and cell lines Detection and Description of a Particular Ostreid Herpesvirus 1 Genotype Associated with Massive Mortality Outbreaks of Pacific oysters, Crassostrea gigas, in France in 2008 Identificat
pathogenicity · medium
Effects of vitamin C on transport of Penaeus monodon A multi-biomarker approach to assess the impact of farming systems on black tiger shrimp (Penaeus monodon) Dietary values of Forsythia suspensa extract in Penaeus monodon under normal rearing and V
pathogenicity · medium
Materials and methods
Immune challenge, tissue collection and total RNA
extraction
M.
pathogenicity · medium
The first challenge is the ability to rapidly and efficiently
extract and purify RNA that is free of RT-PCR inhibitors from
shellfish tissues.
pathogenicity · medium
We considered the
possibility that the relative resistance of dsRNA-treated ani-
mals to viral challenge was due to contaminants in the dsRNA
preparations that could copurify with dsRNA during organic
solvent extraction (e.g., LPS and DNA).
pathogenicity · medium
The per os
challenge protocol involves feeding chopped carcasses of suspect
shrimp to SPF juveniles in small tanks.
pathogenicity · medium
The white spot syndrome virus (WSSV)-containing extract used to
challenge shrimp by intramuscular injection has been described elsewhere pre-
viously (34).
pathogenicity · medium
Temperature
In addition, three representative RNA samples extracted with the Qiagen RNeasy FFPE Kit were analyzed using an automated electrophoresis TapeStation system (Agilent, Santa Clara, CA, USA) to investigate the degree of RNA degradation (Supplementary Ma
temperature · medium
Extraction of protein lysate from shrimp samples for Western blot analysis To extract the protein lysates for Western blot analysis, the pleopods from healthy and WSSV-infected shrimp were homogenized in lysis-PBS buffer (PBS diluted 3x in ddH2O at 4
temperature · medium
A high degree of heterogeneity both in the recovery
rates for genome extraction (average, 29.6% 27.0%) and in the RT-PCR inhibition
rates (23.3% 17.9%) was observed, but the values for all samples fell within the
performance criteria defined by th
temperature · medium
A study by Roujian Lu et al., per-
formed next-generation sequencing from BAL or throat swab from nine
patient samples and found interesting observations that the SARS-CoV-
2 genome sequences exhibited > 99·98% sequence similarity among
different pati
temperature · medium
Proteomic analysis of muscle between hybrid abalone andparental lines Haliotis gigantea Reeve and Haliotis discus hannai Ino A proteomic study on postdiapaused embryonic development of brine shrimp (Artemia franciscana) Proteomic Comparison between T
temperature · medium
After thermal extraction, the direct PCR reactions were initiated by adding 25 μL of sample, 400 nM specific primer pairs, and 2X Master Mix (from Ten Giga Bio, BioTools Co, Ltd., Takara Bio Inc., and Thermo Fisher Scientific).
temperature · medium
qPCR reactions was performed in a thermal cycler (iQ5 Bio-Rad, Biorad, Hercules,
California 94547, USA) under the following conditions: each 25 μL reaction contained
12.5 μL of Mix, 5.5 μL of ultrapure water (DNAse/RNAse free), 1 μL of each primer (2
temperature · medium
Response to selection for survival and its influence on growth and yield Summer mortality of selected juvenile Pacific oyster Crassostrea gigas under laboratory conditions and in comparison with field performance New insight for the genetic evaluatio
temperature · medium
Fish
Shellfish Immunol 8:621–629
Article Google Scholar
• Liang P, MacRae TH (1999) The synthesis of a small heat shock/
a-crystallin protein in Artemia and its relationship to stress
tolerance during development.
temperature · medium
Relatively small thermal fluctuations often cause transitory microbiome changes,
whereas more chronic, mild temperature change can induce alternative, but stable, microbiome states.149,152 Notably, microbiomes have
an extensive capacity to develop tol
temperature · medium
Diagnostic And Control Records
No curated diagnostic or control records are available for this virus.
Proteins
🧬
No protein annotations available
Loading additional protein data...
Related Literature (1230 articles)
Clinical emergence of a novel sequence type (ST3672) NDM-1-producing
Ni C, Wang J, Yang C, Gao S, Xu Z, Wang Y, Peng H, Cao W, Han Y
2026
Quantitative Risk Assessment of Hepatitis E Virus from Shellfish Consumption Among Chinese Residents Using Monte Carlo Simulation.
Xie Q, Liu Y, Zhang Z, Zhang H, Xu J, Wang Y, Zhao Y
2026
lncRNA-803 Suppresses Apoptosis in DF-1 Cells via the miR-6555-3p/MDM4/p53 Axis.
Han S, Yang J, Qiu Y, Zhao S, Jiang Y, Han L, Han L
2026
Direct LAMP for on-site rapid detection of Vibrio parahaemolyticus in shrimp (Litopenaeus vannamei) aquaculture water.
Pu X, Lu F, Yang Q, Han Z, Zhu X, Chen J, Zhang D, Zhang X
2026
Transcriptomic study of WSSV infection in Litopenaeus vannamei lymphoid organ via single nuclei RNA sequencing.
Florea A, Wade N, Salisbury SJ, Furniss J, Fraslin C, Chapuis A, Sullivan K, Stewart R, Robledo D, Bean TP
2026
Carvacrol as a one health-relevant antimicrobial agent: mechanistic insights on its impact on gnotobiotic Artemia and Vibrio campbellii interactions.
Baruah K, Debnath D, Patabandi PPSK, Bossier P, Yang Q, Defoirdt T, Norouzitallab P
2026
Genome-wide characterization of NBS-encoding genes in
Yang X, Zeng F, Liu B, Yang Z, Wei H, Gao J, Wang P, Liu X
2026
Transposon mutant library reveals the complex regulatory network of biofilm formation in
Yuan S, Wang W, Yin H, Luu QH, Kong L, Zhang X, Lu S, Bai X, Han X, Jiang W
2026
Whole genome and phylogenomic insights into Vibrio parahaemolyticus from Pacific White Shrimp reveal resistance and virulence traits in Bangladeshi aquaculture.
Masum MHU, Uddin MS, Chamonara K, Sultana S, Islam S, Siddiqua A
2026
Microbial decomposer diversity and metabolic function during the decomposition of brine shrimp carcasses in a saline lake.
Gao L, Fang BZ, Yang J, Lian ZH, Chen Y, Mohamad OAA, Xu QY, Liu YH, Wu D, Yuan Y, Abdugheni R, Li MM, Wang P, Ortúzar M, Li XY, Huang JR, Liu L, Jiang HC, Shu W, Hedlund BP, Li WJ, Jiao JY
2026
Native
Pazmiño-Gomez B, Rodas-Pazmiño K, Pazmiño-Pérez R, Tapia-Guijarro T, Balcazar-Quimi W, Valle-Asan S, Salazar-Vera S, Villalva-Vera M, Ochoa-Fajardo D, Rodas-Neira E
2026
Environmental considerations in hepatitis E virus transmission: Is there a missing link?
Campbell R, Russell C, Izopet J, Nassim K, Sonderup M, Pischke S, Wallace SJ, Madden RG
2026
Genomic and phylogenomic exploration of Vibrio cholerae strain SU129B isolated from Penaeus vannamei: Resistance, virulence, and evolutionary dynamics in bangladeshi aquaculture.
Uddin MS, Chamonara K, Masum MHU, Siddiqua A, Hossain I, Sultana S, Islam S
2026
Clinical significance and mechanistic study of SOX2-OT and miR-27b-3p expression in children with viral myocarditis.
Yang T, Wang W, Wang H
2026
Unveiling the hidden viral biodiversity and potential ecological functions with global coral holobiont virome database.
Wu M, Wen X, Liu S, Ngo HH, Cai Z, Zhou J
2026
Shellfish as a Potential Source of Hepatitis E Virus: Epidemiological Evidence, Biological Plausibility, and Research Gaps.
Okamoto H
2026
Genomic and phenotypic characterization of Vibrio cholerae strain SU109: a genomic investigation of a shrimp-associated strain from Bangladesh.
Chamonara K, Masum MHU, Uddin MS, Siddiqua A, Sultana S, Islam S
2026
Assessment of the Incidence of Vibrio spp. in Shrimp Farms Relative to Water Parameters and Their Molecular Detection in the Southwest Coastal Region of Bangladesh.
Sohidullah M, Matubber B, Rahman MH, Sayeed A, Rahman S, Yesmin L, Hossain MJ, Chowdhury MI, Alam MA
2026
NOD-like receptor repertoire in the chromosome-level genome of the demosponge
Koutsouveli V, Torres-Oliva M, Marulanda-Gomez AM, Franke A, Fuß J, Schmitz RA, Hentschel U, Reusch TBH, Pita L
2026
Crustacean Mab21 proteins drive tissue-specific antiviral immunity by activating IKKε outside the canonical nucleic-acid sensing paradigm.
Li H, Li Q, Yang H, Wang X, Lv A, Di X, Wang R, Wang S, Yin B, He J, Li C
2026
Physiological and biochemical characterization of trypsin from Neocaridina denticulata sinensis and its roles in ontogenesis and immune response.
Feng D, Song Y, Wu Z, Liu W, Pu Y, Gao Y, Sun Y, Zhang J
2026
Genome-based characterization of AHPND and non-AHPND
Lee SY, Choi HJ, Lee S, Choi J, Kwak JS, Kang YJ, Hong SC
2026
AlphaFold modeling of the white spot syndrome virus polymerase.
Skern T, Oakey J
2026
White spot syndrome virus IE1 protein hijacks the host pentose phosphate pathway to fuel viral replication.
Zhang J, Lu K, Zhu J, Aweya JJ, Zhang Y, Yao D
2026
Onnamides A and B Suppress Hepatitis B Virus Transcription by Inhibiting Viral Promoter Activity.
Hayashi Y, Arizono S, Higa N, Tyas TA, Akahori Y, Maeda K, Toyama M, Mori-Yasumoto K, Yasumoto-Hirose M, Miyakawa K, Tanaka J, Jomori T
2026
Effect of the antimicrobial peptide BmKn2-7 in inhibiting Vibrio parahaemolyticus and its role in improving microbiota, immunity and Vibrio resistance in Litopenaeus vannamei.
Liang Q, Wang Q, Chi P, Fan D, Tan B, Xie S, Deng J, Liu H, Zeng L
2026
Combined Vibrio and nanoplastics stress promotes nanoplastic accumulation while reducing bacterial lethality in shrimp.
Zhong R, Fang X, Li C, Zheng B, Zhang G, Gong H, Yan M
2026
De novo transcriptome assembly of hemocytes from Haliotis discus hannai following poly(I:C) stimulation.
Yoo SH, Kim JG, Lee HE, Park YJ, Seo YB, Jo MJ, Kim JO, Kim GD
2026
Characterization of RNA interference in the cnidarian Nematostella vectensis reveals partial target silencing but lack of small RNA amplification.
Admoni Y, Lewandowska M, Aharoni R, Shi J, Zhang X, Chen Q, Moran Y
2026
Circular RNA circPLXNC1 functions as an inhibitor of senescence by regulating autophagy in osteoarthritis.
Zhou H, Ji Z, Sun H, Zhang W, Huang Y, Jin G, Cai H, Huang X, Dai J, Zhao J, Chen H, Fan S, Wu Y, Shen J
2026
A Novel Crustavirus as a Candidate Aetiology of Tail Fan Necrosis in New Zealand Red Rock Lobsters, Jasus edwardsii.
Grimwood RM, Zamora LN, Darnley JA, Delisle L, Hutson KS, Hills J, Geoghegan JL
2026
CRISPR-Cas12a-based lateral flow detection of white spot syndrome virus: a dual-target approach for detection of early and latent infection.
Manojkumar C, Limbola M, Paul S, Thangadurai K, Rajendran KV, Roy A, Mandal B, Jeena K, Bedekar MK.
2026
Experimental susceptibility of Macrobrachium rosenbergii (de Man) subadults and adults to infectious myonecrosis virus (IMNV)
da Silva SPA; Dos Santos FL; da Silva SMBC
2026
An Ex Vivo Lung Histoculture Model for Studying Pulmonary Infection and Immune Response With SARS-CoV-2 as an Example of RNA Virus.
Maryukhnich EV, Potashnikova DM, Vorobyeva DA, Rusakovich GI, Tvorogova AV, Kalinskaya AI, Pinegina NV, Kovyrshina AV, Dolzhikova IV, Postnikov AB, Rozov FN, Sotnikova TN, Kanner DY, Logunov DY, Gintsburg AL, Vasilieva EJ.
2025
A novel exploration of the extraction of sea cucumber glycoproteins and their potential mechanism in prediabetes intervention.
Tang L, Cai S, Xiao M, Li D, Mou H.
2025
A novel exploration of the extraction of sea cucumber glycoproteins and their potential mechanism in prediabetes intervention
Tang L, Cai S, Xiao M, Li D, Mou H.
2025
Mechanism of SK2 channel gating and its modulation by the bee toxin apamin and small molecules.
Cassell SJ, Li W, Krautwald S, Khoshouei M, Lee YT, Hou J, Guan W, Peukert S, Weihofen W, Whicher JR.
2025
Comparison of intestinal and environmental microbiota of the snapping shrimp (
Zhu FC, Yang YB, Yin QJ, Chen XY, Yu S
2025
Modulating Whiteleg Shrimp (
Garcia A, Fernández-Boo S, Barreto A, Semedo M, Thomsen MH, Stensballe A, Monção M, Matsakas L, Christakopoulos P, Kiron V, Rocha RJM, Costas B
2025
Analysis of mucosal immune dysregulation and safety and tolerability of endoscopic topical steroid therapy for long-COVID hyposmia: randomized, double-blinded pilot study.
Kim S, D'Anniballe VM, Finlay JB, Ko T, Wang M, Jang DW, Abi-Hachem R, Goldstein BJ
2025
Isolation and characterization of four novel Vibrio parahaemolyticus bacteriophages from oysters.
Aldaroub J, Walsky CM, Ewell RE, Aylward FO, Stevens AM, Burke AK
2025
Prevalence, bacterial load, and genomic characterization of
Shan F, Li W, Chu Z, Hou P, Sun N, Li R, Liu X, Chen W, Zhong L, Yan S, Cui S, Guo Y
2025
Insights on Minimizing False Positives in IHHNV Detection: Experiences from Ecuador's
Intriago P, Del Barco M, Vásquez MM, Montiel B, Villamar R
2025
Analysis of Cembrane-Type Diterpenoids from Cultured Soft Coral
Wang YC, Tai SB, Yang JL, Liu PF, Sung PJ, Su JH, Chen CL
2025
Infection and resistance mechanisms of phage vB_VpM-PP270 in
Xihui Z, Junshan H, Jiayin X, Luqi T, Pei L, Wei J, Wei Z
2025
Ammonia Stress Disrupts Intestinal Health in
Duan Y, Nan Y, Li J, Xiao M, Wang Y, Zhu R
2025
Changes in Intestinal Microbial Community of the Black Tiger Shrimp
Duan Y, Nan Y, Huang J, Zhang Z, Sui Y, Dan X
2025
Prevalence, Virulence and Antimicrobial Resistance of
Li Y, Liu J, Yang X, Lan W, Zhao Y, Sun X
2025
WSSV-induced reversal of the malate-aspartate shuttle facilitates viral replication in shrimp hemocytes.
Guo FJ, Huang KL, Chen CY, Cheng SW, Ng YS, Wang HC
2025
Loading additional literature...
Geographic Distribution
Thailand
5 isolates
China
2 isolates
Australia
2 isolates
India
1 isolates
Taxonomy Information
Family
Picornavirales
Host Phylum
Arthropoda
Genome Type
ssRNA
Discovery Method
metagenomic_survey
ICTV Classification Mapping
Alphanodavirus boolarraense
Nodaviridae / Alphanodavirus
Related Isolates
| Accession | Length | GC | Completeness | Country | Year |
|---|---|---|---|---|---|
| AM114037 | N/A | N/A | metadata_only | N/A | N/A |
| AY247793 | 796 | 43.6 | unknown | N/A | N/A |
| DQ174318 | N/A | N/A | metadata_only | China | N/A |
| DQ189991 | N/A | N/A | metadata_only | Thailand | N/A |
| DQ521573 | N/A | N/A | metadata_only | China | N/A |
| EF159731 | N/A | N/A | metadata_only | N/A | N/A |
| EU150130 | N/A | N/A | metadata_only | Thailand | N/A |
| EU150131 | N/A | N/A | metadata_only | Thailand | N/A |
| EU150132 | N/A | N/A | metadata_only | Thailand | N/A |
| EU150133 | N/A | N/A | metadata_only | Thailand | N/A |
| FJ379532 | 508 | 43.9 | unknown | Australia | N/A |
| HQ637180 | N/A | N/A | metadata_only | India | N/A |
| JQ418299 | 525 | 41.9 | unknown | N/A | N/A |
| NC_043197 | 796 | 43.6 | unknown | N/A | N/A |
| NC_043492 | N/A | N/A | metadata_only | N/A | N/A |
| NC_043493 | N/A | N/A | metadata_only | N/A | N/A |
| NC_043494 | N/A | N/A | metadata_only | N/A | N/A |
| NC_043495 | N/A | N/A | metadata_only | N/A | N/A |
| NC_043496 | N/A | N/A | metadata_only | N/A | N/A |
| NC_043497 | N/A | N/A | metadata_only | N/A | N/A |
| NC_043498 | N/A | N/A | metadata_only | N/A | N/A |
| OP508302 | N/A | N/A | metadata_only | Australia | N/A |