Lytechinus variegatus variable sea urchin associated circular virus
Circoviridae Echinodermata extendedKR528569
Genome And Source
Length
2,167
Type
dsDNA
GC%
46.8%
Completeness
unknown
Country
N/A
Year
N/A
📋 Data Provenance
Genome Browser
No ORF position data available for this genome.
Curation Status
2
Isolates
2
Hosts
1
Proteins
✓
Sequence
Related Viruses
No related viruses found.
Reference
Petabase-scale sequence alignment catalyses viral discovery
Edgar RC, Taylor J, Lin V, et al.
Nature 2022
PMID: 35058634
DOI: 10.1038/s41586-021-04332-2
ICTV Mapping
No reviewed species-level mapping is available. Family-level ICTV references:
- Circovirus baizhenhe (Circovirus)
- Circovirus ban (Circovirus)
- Circovirus barbel (Circovirus)
- Circovirus bastao (Circovirus)
- Circovirus bear (Circovirus)
Reviewed Evidence
Only manual-checked evidence records are displayed. Inferred records (without direct isolate linkage) are shown with a yellow badge.
Virulence / pathogenicity
For viral challenge data, a binomial generalized linear model was fitted, with survival counts in the final day (12 DPI) as response variable and treatment levels and experiment as fixed effects.
pathogenicity · medium
Proteomic analysis of muscle between hybrid abalone andparental lines Haliotis gigantea Reeve and Haliotis discus hannai Ino A proteomic study on postdiapaused embryonic development of brine shrimp (Artemia franciscana) Proteomic Comparison between T
pathogenicity · medium
However, these challenge tests have proven to exert variable mortalities that could be attributed to the non-uniformity of viral loads in the tissues offered during the tests [11,12].
pathogenicity · medium
nov., the causal agent of nocardiosis in Pacific oysters Investigation of the relationship between the presence of a Gram-positive bacterial infection and summer mortality of the Pacific oyster, Crassostrea gigas Thunberg Bacteriological Studies on t
pathogenicity · medium
Estimated global mortality associated with the first 12 months of 2009 pandemic influenza A H1N1 virus circulation: a modelling study The universal influenza vaccine M2e-HBc administered intranasally in combination with the adjuvant CTA1-DD provides
pathogenicity · medium
On the
other hand, there is the potential for much uncontrolled
environmental variation in viral titre among shrimp in
the ponds, and thus, natural outbreaks may have more
variable environmental effects than controlled challenge
tests, but the p
pathogenicity · medium
All bacterial strains pre-
sented variable and high mortality in the challenge test (>74.2%, Table 2).
pathogenicity · medium
The
crude IHHNV stock was subsequently used in the challenge tests
Abbreviations: vcDNA, viral copy DNA(s); lvcDNA, linear viral copy DNA;
cvcDNA, circular viral copy DNA; IHHNV, Infectious hypodermal and
hematopoietic necrosis disease virus; PS-DNas
pathogenicity · medium
Fulltext: virulence
pathogenicity · medium
Pathogenicity terms found: virulence
Viral metagenomics has recently revealed the ubiquitous and diverse nature of single-stranded DNA (ssDNA) viruses that encode a conserved replication initiator protein (Rep) in the marine environment.
pathogenicity · high
Temperature
[66]
Kitomer (Marinard,
Canada)
19
500
Linear calf thymus
DNA (13 kbp)
—
A panel of biophysical techniques (conductivity, zeta potential, dynamic light scattering, atomic
force microscopy, circular dichroism and UV/VIS spectroscopy) were used to dete
temperature · medium
Proteomic analysis of muscle between hybrid abalone andparental lines Haliotis gigantea Reeve and Haliotis discus hannai Ino A proteomic study on postdiapaused embryonic development of brine shrimp (Artemia franciscana) Proteomic Comparison between T
temperature · medium
Microbial communities experienced during early development shape the host immune system and epigenome.
temperature · medium
Environmental challenge trials induce a biofluorescent response in the green sea urchin Strongylocentrotus droebachiensis.
temperature · medium
Temperature data found: temperature, heat, degree, °C
Viral metagenomics has recently revealed the ubiquitous and diverse nature of single-stranded DNA (ssDNA) viruses that encode a conserved replication initiator protein (Rep) in the marine environment.
temperature · high
In the literature, according to the site, the temperature threshold was variable: 22°C to 25°C in the west coast of the USA [27,48] and 18 to 20°C in France [9,49].
Since its molecular characterisation, Ostreid herpesvirus 1 (OsHV-1) has been regularly detected in Crassostrea gigas in France.
temperature · high
Here, we present the first metagenomic study of viral communities in corals thriving in a thermally variable water body in which the temperature fluctuates between 11 and 39°C in different seasons.
temperature · high
Temperature profiles obtained from data loggers on the surface of the sand were highly variable, ranging as much as 22°C over a 48 h period as compared to only 9°C when buried at 15 cm at the same site in the same time period (Pierces Point, HT; elec
temperature · high
The culture conditions were filtered in circulating water with a salinity of 16‰, the water temperature was maintained at 28–30°C, and the shrimp were fed twice a day with Artemia cysts at 5% of their body weight in a 200 L aerated circular aquarium.
temperature · high
Fulltext: temperature, degree, °C
temperature · high
Diagnostic And Control Records
No curated diagnostic or control records are available for this virus.
Proteins
🧬
No protein annotations available
Loading additional protein data...
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Geographic Distribution
No geographic distribution data available
Taxonomy Information
Family
Circoviridae
Host Phylum
Echinodermata
Genome Type
dsDNA
Discovery Method
metagenomic_survey
Related Isolates
Sequence
Loading sequence...