KC248413
Genome And Source
Length
N/A
Type
dsDNA
GC%
N/A
Completeness
metadata_only
Country
N/A
Year
N/A
📋 Data Provenance
Genome Browser
No ORF position data available for this genome.
Curation Status
1
Isolates
1
Hosts
1
Proteins
—
Sequence
Related Viruses
No related viruses found.
Reference
Metagenomic identification, seasonal dynamics and potential transmission mechanisms of a Daphnia- associated putative RNA-DNA virus hybrid in two temperate lakes
Hewson,I. and Hairston,N.G. Jr.
Unpublished unknown
ICTV Mapping
No ICTV mapping is available or reviewed for this record.
Reviewed Evidence
Only manual-checked evidence records are displayed. Inferred records (without direct isolate linkage) are shown with a yellow badge.
Virulence / pathogenicity
The susceptible
Figure 3 Mortality analysis by 442 bp and 236 bp microsatellite DNA marker after WSSV Challenge experiment.
pathogenicity · medium
Specific (CT)n Microsatellite Genotypes
Were Associated With WSSV-Resistance
According to the survival rate curve, we chose the mortality peaks
(Figure 3, arrow) as the cut-off points for dividing each population
of shrimp into two groups: WSSV-suscep
pathogenicity · medium
Hosts
Diagnostic And Control Records
No curated diagnostic or control records are available for this virus.
Proteins
🧬
No protein annotations available
Loading additional protein data...
Related Literature (78 articles)
Viral metagenomic investigation of two Caribbean echinoderms,
Hewson I, Brandt M, Budd K, Breitbart M, DeRito C, Gittens S, Henson MW, Hylkema A, Sevier M, Souza M, Vilanova-Cuevas B, Von Hoene S
2024
A Chromosome-level genome assembly of giant river prawn (Macrobrachium rosenbergii).
Zheng Y, Guo G, Lv Y, Gao Q, Zhou D, Zhang L, Tu G, Weng S, Li C, He J, Wang M
2024
RNA Interference Applied to Crustacean Aquaculture
Carlos Fajardo; Marcos De Donato; Mario Macedo; Patai Charoonnart; Vanvimon Saksmerprome; Luyao Yang; Saul Purton; Juan Miguel Mancera
2024
A simple sequence repeats marker of disease resistance in shrimp
Yin B, Wang H, Weng S, Li S, He J, Li C
2023
Diversity and molecular epidemiology of Ostreid herpesvirus 1 in farmed Crassostrea gigas in Australia: Geographic clusters and implications for "microvariants" in global mortality events.
Trancart S, Tweedie A, Liu O, Paul-Pont I, Hick P, Houssin M, Whittington RJ
2023
Toxic impact of polystyrene microplastic particles in freshwater organisms.
Nugnes R, Lavorgna M, Orlo E, Russo C, Isidori M
2022
Metagenomic Assessment of DNA Viral Diversity in Freshwater Sponges,
Butina TV, Petrushin IS, Khanaev IV, Bukin YS
2022
Toward the determination of sensitive and reliable whole-lung computed tomography features for robust standard radiomics and delta-radiomics analysis in a nonhuman primate model of coronavirus disease 2019.
Castro MA, Reza S, Chu WT, Bradley D, Lee JH, Crozier I, Sayre PJ, Lee BY, Mani V, Friedrich TC, O'Connor DH, Finch CL, Worwa G, Feuerstein IM, Kuhn JH, Solomon J
2022
Chronic toxicity of shrimp feed added with silver nanoparticles (Argovit-4®) in
Romo Quiñonez CR, Alvarez-Ruiz P, Mejía-Ruiz CH, Bogdanchikova N, Pestryakov A, Gamez-Jimenez C, Valenzuela-Quiñonez W, Montoya-Mejía M, Nava Pérez E
2022
The sORF-Encoded Peptides, ATP Synthase Subunits, Facilitate WSSV Duplication in Shrimp.
Huo LJ, Lu PY, Li DX, Shi XZ
2022
Viral Shrimp Diseases Listed by the OIE: A Review
Dain Lee; Young-Bin Yu; Jae-Ho Choi; A-Hyun Jo; Sumin Hong; Ju‐Chan Kang; Jun‐Hwan Kim
2022
Genetic Reassortment between Endemic and Introduced
Costa Vincenzo A; Geoghegan Jemma L; Holmes Edward C; Harvey Erin
2022
Identification and Full Characterisation of Two Novel Crustacean Infecting Members of the Family
Bateman KS, Kerr R, Stentiford GD, Bean TP, Hooper C, Van Eynde B, Delbare D, Bojko J, Christiaens O, Taning CNT, Smagghe G, van Oers MM, van Aerle R
2021
Genomic Diversity of the Ostreid Herpesvirus Type 1 Across Time and Location and Among Host Species.
Morga B, Jacquot M, Pelletier C, Chevignon G, Dégremont L, Biétry A, Pepin JF, Heurtebise S, Escoubas JM, Bean TP, Rosani U, Bai CM, Renault T, Lamy JB
2021
Genomic and antibody-based assays for the detection of Indian strains of
Naveen Kumar S, Rai P, Karunasagar I, Karunasagar I
2020
Differential Mortality and High Viral Load in Naive Pacific Oyster Families Exposed to OsHV-1 Suggests Tolerance Rather than Resistance to Infection.
Agnew MV, Friedman CS, Langdon C, Divilov K, Schoolfield B, Morga B, Degremont L, Dhar AK, Kirkland P, Dumbauld B, Burge CA
2020
COVID-19 Pandemia: Neuropsychiatric Comorbidity and Consequences.
Sinanović O, Muftić M, Sinanović S
2020
Contribution of Viral Genomic Diversity to Oyster Susceptibility in the Pacific Oyster Mortality Syndrome.
Delmotte J, Chaparro C, Galinier R, de Lorgeril J, Petton B, Stenger PL, Vidal-Dupiol J, Destoumieux-Garzon D, Gueguen Y, Montagnani C, Escoubas JM, Mitta G
2020
Characterization of Tomato leaf curl New Delhi virus associated with leaf curl and yellowing disease of Watermelon and development of LAMP assay for its detection.
Venkataravanappa V, Ashwathappa KV, Reddy CNL, Shankarappa KS, Reddy MK
2020
White spot syndrome viral protein VP9 alters the cellular higher-order chromatin structure.
Tan X, Ravasio A, Ong HT, Wu J, Hew CL
2020
The Complete Genome of an Endogenous Nimavirus (
Bao W, Tang KFJ, Alcivar-Warren A
2020
Development and characterization of white spot disease linked microsatellite DNA markers in Penaeus monodon, and their application to determine the population diversity, cluster and structure.
Mondal D, Dutta S, Chakrabarty U, Mallik A, Mandal N
2019
A new bunya-like virus associated with mass mortality of white-clawed crayfish in the wild.
Grandjean F, Gilbert C, Razafimafondy F, Vucić M, Delaunay C, Gindre P, Bouchard J, Raimond M, Moumen B
2019
Global distribution of white spot syndrome virus genotypes determined using a novel genotyping assay.
Oakey J, Smith C, Underwood D, Afsharnasab M, Alday-Sanz V, Dhar A, Sivakumar S, Sahul Hameed AS, Beattie K, Crook A
2019
Discovery of Novel Crustacean and Cephalopod Flaviviruses: Insights into the Evolution and Circulation of Flaviviruses between Marine Invertebrate and Vertebrate Hosts.
Parry R, Asgari S
2019
Mendelian inheritance of endogenous viral elements (EVE) of white spot syndrome virus (WSSV) in shrimp.
Taengchaiyaphum S, Srisala J, Bunphimpapha P, Supungul P, Tassanakajon A, Chaiyapechara S, Bowornpinyo S, Sritunyalucksana K, Flegel TW
2019
ICTV virus taxonomy profile: Sarthroviridae.
Sahul Hameed AS, Ninawe AS, Nakai T, Chi SC, Johnson KL, Ictv Report Consortium
2018
Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters.
de Lorgeril J, Lucasson A, Petton B, Toulza E, Montagnani C, Clerissi C, Vidal-Dupiol J, Chaparro C, Galinier R, Escoubas JM, Haffner P, Dégremont L, Charrière GM, Lafont M, Delort A, Vergnes A, Chiarello M, Faury N, Rubio T, Leroy MA, Pérignon A, Régler D, Morga B, Alunno-Bruscia M, Boudry P, Le Roux F, Destoumieux-Garzόn D, Gueguen Y, Mitta G
2018
Development of a bicistronic expression system in the branchiopod crustacean Daphnia magna.
Kumagai H, Matsuura T, Kato Y, Watanabe H
2017
Survey, symptomatology, transmission, host range and characterization of begomovirus associated with yellow mosaic disease of ridge gourd in southern India.
Patil CV, Ramdas SV, Premchand U, Shankarappa KS
2017
iTRAQ-Based Identification of Proteins Related to Muscle Growth in the Pacific Abalone, Haliotis discus hannai.
Huang J, You W, Luo X, Ke C
2017
Occurrence of OsHV-1 in
Prado-Alvarez M, Darmody G, Hutton S, O'Reilly A, Lynch SA, Culloty SC
2016
Study on the Distribution of Disease-Resistant Shrimp Identified by DNA Markers in Respect to WSSV Infection in Different Seasons Along the Entire East Coast of India Aiming to Prevent White Spot Disease in Penaeus monodon.
Mallik A, Chakrabarty U, Dutta S, Mondal D, Mandal N
2016
Discovery, Prevalence, and Persistence of Novel Circular Single-Stranded DNA Viruses in the Ctenophores Mnemiopsis leidyi and Beroe ovata.
Breitbart M, Benner BE, Jernigan PE, Rosario K, Birsa LM, Harbeitner RC, Fulford S, Graham C, Walters A, Goldsmith DB, Berger SA, Nejstgaard JC
2015
Detection of undescribed ostreid herpesvirus 1 (OsHV-1) specimens from Pacific oyster, Crassostrea gigas.
Martenot C, Lethuillier O, Fourour S, Oden E, Trancart S, Travaillé E, Houssin M
2015
Identification and characterisation of microsatellite DNA markers in order to recognise the WSSV susceptible populations of marine giant black tiger shrimp, Penaeus monodon.
Chakrabarty U, Dutta S, Mallik A, Mondal D, Mandal N
2015
Comparative paleovirological analysis of crustaceans identifies multiple widespread viral groups.
Metegnier G, Becking T, Chebbi MA, Giraud I, Moumen B, Schaack S, Cordaux R, Gilbert C
2015
Interaction of Vibrio spp. with the Inner Surface of the Digestive Tract of Penaeus monodon.
Soonthornchai W, Chaiyapechara S, Jarayabhand P, Söderhäll K, Jiravanichpaisal P
2015
RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection.
Rao R, Bing Zhu Y, Alinejad T, Tiruvayipati S, Lin Thong K, Wang J, Bhassu S
2015
Novel circular single-stranded DNA viruses identified in marine invertebrates reveal high sequence diversity and consistent predicted intrinsic disorder patterns within putative structural proteins.
Rosario Karyna; Schenck Ryan O; Harbeitner Rachel C; Lawler Stephanie N; Breitbart Mya
2015
A galectin from the kuruma shrimp (Marsupenaeus japonicus) functions as an opsonin and promotes bacterial clearance from hemolymph.
Shi XZ, Wang L, Xu S, Zhang XW, Zhao XF, Vasta GR, Wang JX
2014
The development of a high density linkage map for black tiger shrimp (Penaeus monodon) based on cSNPs.
Baranski M, Gopikrishna G, Robinson NA, Katneni VK, Shekhar MS, Shanmugakarthik J, Jothivel S, Gopal C, Ravichandran P, Kent M, Arnyasi M, Ponniah AG
2014
In-depth transcriptome analysis of the red swamp crayfish Procambarus clarkii.
Shen H, Hu Y, Ma Y, Zhou X, Xu Z, Shui Y, Li C, Xu P, Sun X
2014
Dual transcriptomics of virus-host interactions: comparing two Pacific oyster families presenting contrasted susceptibility to ostreid herpesvirus 1.
Segarra A, Mauduit F, Faury N, Trancart S, Dégremont L, Tourbiez D, Haffner P, Barbosa-Solomieu V, Pépin JF, Travers MA, Renault T
2014
Generating viral metagenomes from the coral holobiont.
Weynberg KD, Wood-Charlson EM, Suttle CA, van Oppen MJ
2014
Assessment of WSSV prevalence and distribution of disease-resistant shrimp among the wild population of Penaeus monodon along the west coast of India.
Chakrabarty U, Mallik A, Mondal D, Dutta S, Mandal N
2014
Immunological-based assays for specific detection of shrimp viruses.
Chaivisuthangkura P, Longyant S, Sithigorngul P
2014
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Geographic Distribution
No geographic distribution data available
Taxonomy Information
Family
Nucleocytoviricota
Host Phylum
Arthropoda
Genome Type
dsDNA
Discovery Method
metagenomic_survey
Related Isolates
| Accession | Length | GC | Completeness | Country | Year |
|---|---|---|---|---|---|
| KC248413 | N/A | N/A | metadata_only | N/A | N/A |