GU906954.1
传染性皮下和造血组织坏死病毒
Genome And Source
Length
969
Type
ssDNA
GC%
42.8%
Completeness
partial_sequence
Country
Mexico
Year
2005
📋 Data Provenance
Genome Browser
No ORF position data available for this genome.
Curation Status
147
Isolates
13
Hosts
1
Proteins
✓
Sequence
Related Viruses
No related viruses found.
Outbreak Events
None
Global distribution; endemic in most shrimp farming regions; causes significant economic loss through growth reduction
Reference
Genetic signature of rapid IHHNV (infectious hypodermal and hematopoietic necrosis virus) expansion in wild Penaeus shrimp populations.
Robles-Sikisaka Refugio; Bohonak Andrew J; McClenaghan Leroy R; Dhar Arun K
PloS one 2010
PMID: 20668694
DOI: 10.1371/journal.pone.0011799
ICTV Mapping
Shripenbrevirus decapod1
Parvoviridae / Shripenbrevirus
manual_checked · high
Shripenbrevirus decapod1
Parvoviridae / Shripenbrevirus
auto_matched · high
Reviewed Evidence
Only manual-checked evidence records are displayed. Inferred records (without direct isolate linkage) are shown with a yellow badge.
Virulence / pathogenicity
Auto-extracted: pathogenicity in 'A study on the susceptibility of Helice tientsinensis to infectious hypodermal and hematopoietic necrosis virus (IHHNV)'
pathogenicity · medium
Auto-extracted: mortality in 'A study on the susceptibility of Helice tientsinensis to infectious hypodermal and hematopoietic necrosis virus (IHHNV)'
mortality · medium
Auto-extracted: mortality in 'Simultaneous detection of five shrimp pathogens using a single-tube EvaGreen real-time PCR assay with differential melting temperature.'
mortality · medium
Auto-extracted: mortality in 'An enzymatic recombinase amplification assay combined with CRISPR-Cas12a for the rapid detection of acute hepatopancreatic necrosis disease in shrimp Penaeus vannamei'
mortality · medium
Pathogenicity terms found: virulence
Comparisons of complete genome sequences will help us gain insights into point mutations that can affect virulence of the virus.
pathogenicity · medium
Pathogenicity terms found: lethal
pathogenicity · medium
Pathogenicity terms found: lethal
pathogenicity · medium
Pathogenicity terms found: mortality, virulence, symptom
d virus, Decapoda iridovirus 1 (DIV1) can cause a mortality rate of up to 100% in crustaceans, leading to huge economic losses.
pathogenicity · medium
Preparation of Infectious Study Material To produce materials for disease challenge, moribund larvae were collected from a hatchery that was experiencing mortalities at the time of the study.
pathogenicity · medium
Molluscan cells in culture: Primary cell cultures and cell lines Detection and Description of a Particular Ostreid Herpesvirus 1 Genotype Associated with Massive Mortality Outbreaks of Pacific oysters, Crassostrea gigas, in France in 2008 Identificat
pathogenicity · medium
Temperature
Auto-extracted: temperature in 'One-Pot RAA-CRISPR/Cas12a Assay for Rapid Detection of Infectious Hypodermal and Haematopoietic Necrosis Virus (IHHNV) in Shrimp Aquaculture.'
temperature · medium
Temperature data found: temperature, thermal, °C
d virus, Decapoda iridovirus 1 (DIV1) can cause a mortality rate of up to 100% in crustaceans, leading to huge economic losses.
temperature · medium
Causation and disease: the Henle-Koch postulates revisited Development of a PCR procedure for the detection of a herpes-like virus infecting oysters in France Council Directive 95/70/EC of 22 December 1995 introducing minimum Community measures for t
Since its molecular characterisation, Ostreid herpesvirus 1 (OsHV-1) has been regularly detected in Crassostrea gigas in France.
temperature · medium
IHHNV is highly pathogenic and is associated with a high degree of mortality in L.
The aim of this study was to identify the putative host cell receptor for Infectious Hypodermal and Hematopoietic Necrosis Virus (IHHNV) CP in the gill membrane of L.
temperature · medium
Response to selection for survival and its influence on growth and yield Summer mortality of selected juvenile Pacific oyster Crassostrea gigas under laboratory conditions and in comparison with field performance New insight for the genetic evaluatio
temperature · medium
Pertinent examples of pathogens and parasites affecting marine aquaculture and their temperature ranges, optimal conditions, and critical
thresholds affecting their environmental survival
Disease
Pathogen/Parasite
(taxonomy)
Hosts
Temperature
range (
temperature · medium
Fulltext: degree
temperature · medium
Fulltext: °C
temperature · medium
Fulltext: thermal, °C
temperature · medium
Fulltext: heat shock
temperature · medium
Hosts
Acanthaster planci
棘冠海星（棘皮动物） Acanthasteridae
Callinectes arcuatus
弧形美青蟹 Portunidae
Farfantepenaeus californiensis
加州白对虾 Penaeidae
Fenneropenaeus indicus
印度对虾 Penaeidae
Gerres cinereus
银鲈（鱼类） Gerreidae
Goniopsis cruentata
红蟹 Grapsidae
Litopenaeus stylirostris
西方白对虾 Penaeidae
Litopenaeus vannamei
南美白对虾/凡纳滨对虾 Penaeidae
Macrobrachium rosenbergii
罗氏沼虾/马来西亚大虾 Palaemonidae
Oreochromis sp.
罗非鱼（鱼类） Cichlidae
Penaeus monodon
斑节对虾/草虾/黑虎虾 Penaeidae
Penaeus spp.
对虾属（多种） Penaeidae
Penaeus stylirostris
西方白对虾 Penaeidae
Diagnostic And Control Records
Diagnostic methods
IHHNV-PCR
Nucleic acid amplification · NS1/NS2 gene
high
IHHNV-qPCR
Nucleic acid amplification · NS1 gene
high
No single PCR test is sufficient to determine parvovirus IHHNV presence in or impact on farmed shrimp production
Nucleic acid amplification · target not specified
medium
Control methods
SPF broodstock certification
biosecurity · high
Elimination of IHHNV from breeding stocks through PCR screening and quarantine is the gold standard.
Proteins
🧬
No protein annotations available
Loading additional protein data...
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Loading additional literature...
Geographic Distribution
Mexico
97 isolates
Philippines
12 isolates
India
9 isolates
Vietnam
5 isolates
Taiwan
5 isolates
China
4 isolates
South Korea
3 isolates
Canada
3 isolates
Taxonomy Information
Family
Parvoviridae
Host Phylum
Arthropoda
Genome Type
ssDNA
Discovery Method
isolated_and_cultured
ICTV Classification Mapping
Shripenbrevirus decapod1
Parvoviridae / Shripenbrevirus
Shripenbrevirus decapod1
Parvoviridae / Shripenbrevirus
Related Isolates
| Accession | Length | GC | Completeness | Country | Year |
|---|---|---|---|---|---|
| AF218266.2 | 3,909 | 43.0 | complete_genome | Canada | 2023 |
| AJ884914.1 | 356 | 42.4 | partial_sequence | Canada | 2023 |
| AY102034.1 | 3,216 | 43.1 | gene_fragment | N/A | 2003 |
| AY355306.1 | 3,742 | 42.8 | partial_sequence | Taiwan | 2016 |
| AY355307.1 | 3,749 | 43.2 | gene_fragment | Taiwan | 2004 |
| AY355308.1 | 3,742 | 42.8 | gene_fragment | Taiwan | 2004 |
| AY362547.1 | 3,667 | 42.7 | gene_fragment | Thailand | 2004 |
| AY362548.1 | 3,775 | 42.9 | gene_fragment | Ecuador | 2004 |
| AY590120.1 | 392 | 46.2 | partial_sequence | Australia | 1999 |
| AY590121.1 | 392 | 45.4 | partial_sequence | New Caledonia | 2004 |
| AY835846.1 | 358 | 44.1 | partial_sequence | Vietnam | 2005 |
| DQ057982.1 | 389 | 46.8 | partial_sequence | Taiwan | 2016 |
| DQ057983.1 | 389 | 47.0 | partial_sequence | Taiwan | 2016 |
| EF633688.1 | 3,833 | 43.0 | complete_genome | China | 2007 |
| EU518246.1 | 1,092 | 46.1 | gene_fragment | India | 2007 |
| EU552487.1 | 309 | 39.2 | partial_sequence | India | 2007 |
| EU675312.1 | 3,832 | 41.9 | complete_genome | Australia | 2004 |
| EU675313.1 | 911 | 42.5 | partial_sequence | Australia | 2003 |
| EU848309.1 | 1,896 | 43.9 | partial_sequence | India | 2008 |
| EU848310.1 | 279 | 46.6 | unknown | India | 2008 |
| EU848312.1 | 601 | 39.4 | partial_sequence | India | 2008 |
| FJ169961.1 | 990 | 42.5 | gene_fragment | India | 2007 |
| GU138649.1 | 1,004 | 40.6 | partial_sequence | Philippines | 2007 |
| GU138650.1 | 1,057 | 41.1 | partial_sequence | Philippines | 2008 |
| GU138651.1 | 1,080 | 41.2 | partial_sequence | Philippines | 2008 |
| GU138652.1 | 1,010 | 41.1 | partial_sequence | Philippines | 2008 |
| GU138653.1 | 1,011 | 41.0 | partial_sequence | Philippines | 2008 |
| GU138654.1 | 1,003 | 40.9 | partial_sequence | Philippines | 2008 |
| GU138655.1 | 1,158 | 41.2 | partial_sequence | Philippines | 2009 |
| GU138656.1 | 1,178 | 41.3 | partial_sequence | Philippines | 2007 |
| GU138657.1 | 1,150 | 41.3 | partial_sequence | Philippines | 2009 |
| GU138658.1 | 1,174 | 42.0 | partial_sequence | Philippines | 2009 |
| GU138659.1 | 1,160 | 41.9 | partial_sequence | Philippines | 2007 |
| GU138660.1 | 1,159 | 41.4 | partial_sequence | Philippines | 2009 |
| GU138661.1 | 1,080 | 41.9 | partial_sequence | Myanmar | 2007 |
| GU906889.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906890.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906891.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906892.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906893.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906894.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906895.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906896.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906897.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906898.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906899.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906900.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906901.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906902.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906903.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906904.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906905.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906906.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906907.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906908.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906909.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906910.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906911.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906912.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906913.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906914.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906915.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906916.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906917.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906918.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906919.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906920.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906921.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906922.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906923.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906924.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906925.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906926.1 | 969 | 42.2 | partial_sequence | Mexico | 2004 |
| GU906927.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906928.1 | 969 | 42.2 | partial_sequence | Mexico | 2004 |
| GU906929.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906930.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906931.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906932.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906933.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906934.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906935.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906936.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906937.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906938.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906939.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906940.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906941.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906942.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906943.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906944.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906945.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906946.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906947.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906948.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906949.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906950.1 | 969 | 42.6 | partial_sequence | Mexico | 2005 |
| GU906951.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906952.1 | 969 | 42.2 | partial_sequence | Mexico | 2005 |
| GU906953.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906954.1 | 969 | 42.8 | partial_sequence | Mexico | 2005 |
| GU906955.1 | 969 | 42.8 | partial_sequence | Mexico | 2005 |
| GU906956.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906957.1 | 969 | 42.5 | partial_sequence | Mexico | 2005 |
| GU906958.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906959.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906960.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906961.1 | 969 | 42.8 | partial_sequence | Mexico | 2005 |
| GU906962.1 | 969 | 42.8 | partial_sequence | Mexico | 2005 |
| GU906963.1 | 969 | 42.5 | partial_sequence | Mexico | 2005 |
| GU906964.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906965.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906966.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906967.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906968.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906969.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906970.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906971.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906972.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906973.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906974.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906975.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906976.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906977.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| HM536212.1 | 388 | 47.7 | partial_sequence | Malaysia | 2009 |
| HQ287006.1 | 356 | 43.0 | partial_sequence | China | 2001 |
| HQ699073.1 | 990 | 42.2 | gene_fragment | South Korea | 2010 |
| HQ699074.1 | 990 | 41.9 | gene_fragment | South Korea | 2010 |
| JN098516.1 | 429 | 44.8 | partial_sequence | India | 2010 |
| JN377975.1 | 3,914 | 43.1 | complete_genome | South Korea | 2010 |
| JN616415.1 | 3,815 | 43.5 | gene_fragment | Vietnam | 2009 |
| JX258653.1 | 3,901 | 42.8 | complete_genome | China | 2009 |
| JX840067.1 | 3,824 | 43.0 | complete_genome | Vietnam | 2012 |
| KC189612.1 | 208 | 43.8 | partial_sequence | Mexico | 2009 |
| KC189613.1 | 208 | 43.8 | partial_sequence | Mexico | 2009 |
| KC189614.1 | 208 | 43.8 | partial_sequence | Mexico | 2009 |
| KC189615.1 | 208 | 43.8 | partial_sequence | Mexico | 2009 |
| KC189616.1 | 208 | 43.8 | partial_sequence | Mexico | 2009 |
| KC189617.1 | 208 | 43.3 | partial_sequence | Mexico | 2009 |
| KC189618.1 | 208 | 42.8 | partial_sequence | Mexico | 2009 |
| KC189619.1 | 208 | 44.2 | partial_sequence | Mexico | 2009 |
| KC513422.1 | 3,824 | 43.2 | gene_fragment | Vietnam | 2011 |
| KF031144.1 | 3,912 | 43.2 | complete_genome | Vietnam | 2007 |
| KF214742.1 | 3,909 | 43.0 | complete_genome | China | 2011 |
| KF805628.1 | 391 | 48.1 | partial_sequence | India | 2014 |
| KF805629.1 | 389 | 47.0 | partial_sequence | India | 2014 |
| NC_002190.2 | 3,909 | 43.0 | complete_genome | Canada | 2023 |
Sequence
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