EU760383
Genome And Source
Length
276
Type
ssRNA
GC%
51.8%
Completeness
unknown
Country
China
Year
N/A
📋 Data Provenance
Genome Browser
No ORF position data available for this genome.
Curation Status
1
Isolates
2
Hosts
1
Proteins
✓
Sequence
Related Viruses
No related viruses found.
Reference
Petabase-scale sequence alignment catalyses viral discovery
Edgar RC, Taylor J, Lin V, et al.
Nature 2022
PMID: 35058634
DOI: 10.1038/s41586-021-04332-2
ICTV Mapping
Ailurivirus agiapa
Picornaviridae / Ailurivirus
auto_matched · high
Reviewed Evidence
Only manual-checked evidence records are displayed. Inferred records (without direct isolate linkage) are shown with a yellow badge.
Virulence / pathogenicity
Poornima
123
Table 1 Discovery of viruses in humans, terrestrial and marine animals, plants and insects and understanding viral ecology using metagenomics
Objective
Finding
Reference
Discovery of viruses in human diseases
To develop a method for vir
Viruses are abundant biological entities on earth and the emergence of viral pathogens has become a serious threat to aquaculture and fisheries worldwide.
pathogenicity · medium
Quantitative real-time PCR analysis revealed the ubiquitous expression of CfIKK1
mRNA in all scallop tissues and challenge with lipopolysaccharide, peptidoglycan, or poly
(I:C) significantly upregulated the expression of CfIKK1.
pathogenicity · medium
Similarly, early
norovirus human challenge studies in the 1970s and 1980s
found leukocytosis during acute norovirus infection (2, 16).
pathogenicity · medium
rosenbergii postlarvae (mean body length, 0.6 cm)
for the experimental challenge study were acquired from the farm without IPS in Jiangsu Province,
China.
pathogenicity · medium
Immune Challenge and Tissue Collection Mud crabs (150 g to 180 g each) obtained from a farm in Chongming County (Shanghai, China) were cultured temporarily in flowing, aerated seawater in 400 L tanks in laboratory (This study did not involve in endan
In this study, we characterized a pair of crustacean homologs of Tube and Pelle in Scylla paramamosain, namely, SpTube and SpPelle, and analyzed their immune functions.
pathogenicity · medium
The evolution of adaptive immune systems Nucleic acid-induced antiviral immunity in invertebrates: An evolutionary perspective Pathogen recognition and innate immunity Genetic analysis of resistance to viral infection Jak-STAT pathways and transcript
pathogenicity · medium
Proteomic analysis of muscle between hybrid abalone andparental lines Haliotis gigantea Reeve and Haliotis discus hannai Ino A proteomic study on postdiapaused embryonic development of brine shrimp (Artemia franciscana) Proteomic Comparison between T
pathogenicity · medium
In addition, the continuous evolution of the norovirus RNA genome is another challenge that needs to be considered when developing onsite detection kits using emerging technologies.
pathogenicity · medium
Animals and Challenge Experiment The Healthy adult ark clams (two years old) were collected from a local farm in Rizhao (Shandong Province, China).
pathogenicity · medium
Download spectrum.00161-22-s0001.pdf, PDF file, 0.1 MB Improving the efficacy of sewage treatment decreases norovirus contamination in oysters Foodborne and food-handler norovirus outbreaks: a systematic review More than 1,000 sick in France from con
pathogenicity · medium
Temperature
Investigating the microbial inactivation effect of low temperature high
pressure carbon dioxide and its application in frozen prawn
(Penaeus vannamei)
Zimeng Lian , Dong Yang , Yongtao Wang , Liang Zhao , Lei Rao *, Xiaojun Liao
College of Food S
temperature · medium
The qPCRs were performed in a real-time thermal cycler (Bio-Rad, USA), with the gene specific primers (for phagocytosis-related genes) and primers that were used in the RT-PCR analysis (for MjSyn) (Table 1), following the instruction of SYBR qPCR pre
temperature · medium
Proteomic analysis of muscle between hybrid abalone andparental lines Haliotis gigantea Reeve and Haliotis discus hannai Ino A proteomic study on postdiapaused embryonic development of brine shrimp (Artemia franciscana) Proteomic Comparison between T
temperature · medium
Reported D-values (minutes required to achieve a log reduction at the indicated temperature) and z-values (number of degrees the temperature has to be increased to achieve a 10-fold reduction in the D-value) for the thermal inactivation of norovirus
temperature · medium
The quantitative real-time RT-PCR (qRT-PCR) was used for accessing miR-21 expression profile [28,29], which was performed on a Roche lightcycler (LightCycler 480) using TaKaRa SYBR Green I kit (Takara, Dalian, China); the thermal cycling condition fo
temperature · medium
qRT-PCR was performed following the manufacturer's instructions
of SYBR Premix Ex Taq (Takara, Dalian, China) using a real-time thermal cycler
(Bio-Rad, USA) in a total volume of 10 μl containing 5 μl of 2 Premix Ex Taq, 1 μl of
the 1:20 diluted cDNA
temperature · medium
Shellfish-Borne Viral Outbreaks: A Systematic Review Large concomitant outbreaks of acute gastroenteritis emergency visits in adults and food-borne events suspected to be linked to raw shellfish, France, December 2019 to January 2020 Outbreaks of Nor
temperature · medium
harveyi that resulted in high levels of host mortality.154 Also, Pacific oysters that
had been acclimated to high temperatures, were protected against subsequent rapid temperature stress resulted in lower mortality and vib-
rio loads than those seen i
temperature · medium
Gene Expression Profile Analysis
Quantitative real time PCR (qRT-PCR) was performed using an
Ultra SYBR mixture protocol (with ROX, CWBio, Beijing,
China) and C1000 thermal cycler (Bio-Rad, USA) to determine
gene expression profiles.
temperature · medium
TABLE 1 Inactivation of GII.4 norovirus in oyster supernatant by HHP
HHP (MPa)a
Mean log10 reduction of NoV RNA SD
at initial sample tempb:
25°C
6°C
300
No RNase
1.0 0.3A
RNase
1.1 0.3aA
3.5 0.4b
400
No RNase
1.4 0.3A
RNase
3.3 0.3aB
3.9
temperature · high
Diagnostic And Control Records
No curated diagnostic or control records are available for this virus.
Proteins
🧬
No protein annotations available
Loading additional protein data...
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Loading additional literature...
Geographic Distribution
China
1 isolates
Taxonomy Information
Family
Zhaoviridae
Host Phylum
Mollusca
Genome Type
ssRNA
Discovery Method
metagenomic_survey
ICTV Classification Mapping
Ailurivirus agiapa
Picornaviridae / Ailurivirus
Related Isolates
Sequence
Loading sequence...